Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015943644.1_cds_XP_016486715.1_77529
CDS Infomation

[gene=LOC107806955] [db_xref=GeneID:107806955] [protein=pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like isoform X2] [protein_id=XP_016486715.1] [location=complement(join(14966..15712,15871..17769))] [gbkey=CDS]
Sequence

ATGGCAGTCTCTGCTAAAACCCCAACTACTTCCCTCCCTTCCTTAGACCTCCCAAACCCT
CAATTCTCTAAACTCCATTCTTCTAAATCTCTAAACTTTTCTCACATCTTCCAAAAATCC
CACCTTTTATTCTTAAAAAAAACCCAGCAAAATTTCCTCCTCAGCTCCTCCTCCACCTCA
ACTCCCACCACTGACCCCAATTCCCATCTTATCCAGCTATGTTCCCACAACCAGCTAGAA
CAAGCCATAATATTCTTAAAGTCAGTAAAAGAACTTCATGGGACTATAGAAGAAGAAACA
TTTGTTTTATTAGCTAGGCTTTGTGAATTTAAGAGGGCATCTAACGAAGCATGTGAAGTT
TTTTCATGTATACTTAACTGTATGTCCCAGTTAAGCTTGAGACTAGGAAATGCATTGTTG
AGCATGTTTGTTAGGCTGGGGAATTTGGGTGATGCTTGGTATGTTTTTGGGAAAATGGAG
GAAAGAGATGTGTTTTCTTGGAATGTTTTGATTGGTGGGTATGCGAAAAATGGTTACTTT
GATGAGGCTTTGGATTTGTATCAAAGGATGTTGTGGGTTGGTGTTAGACCTGATGTGTAT
ACGTTTCCGTGTGTTTTGAGGACTTGTGGTGGCTTGCCTGACTGGAAAATGGGTAGGGAG
ATACATGCTCATGTTTTTAGATTTGGGTATGAGTCGGAAATTGATGTGGTTAATGCTTTG
GTTACTATGTATGTGAAATGTGGTGATGTGTTCATTGCGAGGATGGTGTTTGATGGAATG
CCTAGGAGAGATACAATTTCTTGGAATGCTATGATTGCAGGTTACTTTGAGAACAATGAG
TTTTCGGAAGGGTTGAAGTTGTTTTCGTCGATGAGGGAATTTGGATTTTTTCCGGATTTG
ATGACCATGACAAGTGTGATTTCAGCTTGTGAGGCTCTTGGGGATGAGAGTTTAGGGAAG
GCGCTTCATGGGTACGTGTCAAGAATGGATTTTTATAGTGATGTTTCGGTGCACAACTCT
CTCATTCAACTTTATTCGGCTATTGGGAGTTGGGAGGAAGCAGAGAAGATCTTTGATAGG
ATCCAGTGTAAAGATGTAGTTTCATGGACTGCAATGATTTCGGGTTATGAGAGTAATGGG
TTTCCTGAGAAGGCTGTGGAGACGTACAAAATGATGGAGCTAGAAGGTGTCATGCCGGAT
GAGATTACTATTGCTTCTGTTCTATCTGCCTGTACTTCATTGGGCCTTCTAGAAATGGGT
GTTAAGCTTCATGAACTAGCCGAAAGGAGAGGACTTACAGCATACGTGATTGTTTCAAAC
ACTCTGATCGACTTTTATTCGAAGTGCAACTGTATTGACAAGGCATTGGAAATTTTCCAC
AGGATACCAGATAAAAATGTCATATCTTGGACATCTATCATTCTTGGTCTTCGGATTAAT
AATCACAGTTTGGAAGCTTTGATTTTGTTTAGTCAAATGAAACGCTATCAGGATCCCAAT
ACCGTTACCTTAGTGTCTGTCCTCTCTGCATGTTCTAGAATCGGTGCACTGATGTGTGGT
AAAGAAATACATGCATATGTATTGAGGAACGCTATGGCATTTCATGGTTTTTTACCCAAT
GCACTCCTTGACTTCTATGTGAGGTGTGGAAGGATTGCCCCTGCACTGAATCTGTTTAAT
ATGCAGAAAAAGGATGTTACTGCTTGGAATATTTTGCTGACTGGCTATGCTCAGCGAGGG
CAAGGTGCACTCGCGGTTGAGCTTTTTGATGGAATGCTTACTTCAAAAGTAAAGCCTGAC
GAGATTACTTTCATTTCTCTGTTACGTGCTTGTAGTAGATCCGGGTTGGTGACTAAAGGC
CTTGACTATTTAAATAGCATGGAGAGTAAATATTGCATTAATAACTATCGTGTTGTTCCA
AATCTGAAGCATTACGCTTGTGTGGTTGATCTGCTAGGCCGTGCAGGTCTAGTGGAGGAT
GCTTATGATTTTATTATAACATTGCCTGTGAAACCTGATTCTGCTATCTGGGGGGCTTTA
TTGAATGCGTGTAGGATCCACAGGCAGGTTGAACTTGGAGAACTAGCTGCTAGACATATT
CTTGAAACTGATGAGAGAAGTGTTGGGTATTATGTTCTCCTATGTAACTTCTATTCCGAC
AGTGGCAGATGGGATGAAGTTGCAACGTTAAGGAAGATTATGATAGAAAGAGGACTGACT
GTTGATCCTGGTTGCAGCTGGATAGAAGTAAAGGGAAATGTACATGCATTCCTTAGTGGT
GATAATTTCCACCCCAAAATTAAGGAAATCAATGCGGTTTTGGAAGGATTTTATGAAAAA
ATGAAAACAGCACGTCGTAGTGAATCAGAAAGATATATAGTAAATGAGGTTGAAGATTCA
AAAGCCGAGATCTTTTGTGGACACAGCGAGAGACTGGCTATTGCATTTGGGCTTATAAAT
ACTGCTCCAGGGACACCAATTTGGGTCACAAAGAATCTCTATATGTGCAAGAGCTGTCAT
GACACAATCAAGTTTATCTCTGAGGTTGTCCGGAGGGAGATTTCAGTTAGAGACACTGAG
CATTTCCACCATTTTAAGGATGGAAGATGCACATGTGGGGATGAAAATTATTTGGGAGAA
ACTTGA

Peptide Sequence

PEP ID

XP_016486715.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g15510, chloroplastic-like isoform X2 [Nicotiana tabacum]
Sequence

MAVSAKTPTTSLPSLDLPNPQFSKLHSSKSLNFSHIFQKSHLLFLKKTQQNFLLSSSSTS
TPTTDPNSHLIQLCSHNQLEQAIIFLKSVKELHGTIEEETFVLLARLCEFKRASNEACEV
FSCILNCMSQLSLRLGNALLSMFVRLGNLGDAWYVFGKMEERDVFSWNVLIGGYAKNGYF
DEALDLYQRMLWVGVRPDVYTFPCVLRTCGGLPDWKMGREIHAHVFRFGYESEIDVVNAL
VTMYVKCGDVFIARMVFDGMPRRDTISWNAMIAGYFENNEFSEGLKLFSSMREFGFFPDL
MTMTSVISACEALGDESLGKALHGYVSRMDFYSDVSVHNSLIQLYSAIGSWEEAEKIFDR
IQCKDVVSWTAMISGYESNGFPEKAVETYKMMELEGVMPDEITIASVLSACTSLGLLEMG
VKLHELAERRGLTAYVIVSNTLIDFYSKCNCIDKALEIFHRIPDKNVISWTSIILGLRIN
NHSLEALILFSQMKRYQDPNTVTLVSVLSACSRIGALMCGKEIHAYVLRNAMAFHGFLPN
ALLDFYVRCGRIAPALNLFNMQKKDVTAWNILLTGYAQRGQGALAVELFDGMLTSKVKPD
EITFISLLRACSRSGLVTKGLDYLNSMESKYCINNYRVVPNLKHYACVVDLLGRAGLVED
AYDFIITLPVKPDSAIWGALLNACRIHRQVELGELAARHILETDERSVGYYVLLCNFYSD
SGRWDEVATLRKIMIERGLTVDPGCSWIEVKGNVHAFLSGDNFHPKIKEINAVLEGFYEK
MKTARRSESERYIVNEVEDSKAEIFCGHSERLAIAFGLINTAPGTPIWVTKNLYMCKSCH
DTIKFISEVVRREISVRDTEHFHHFKDGRCTCGDENYLGET

Transcript Sequence

Gene sequence data has not been registered.